Phylogenetic inference from raw reads and Read2Tree with David Dylus - the bioinformatics chat | Lyssna här

In this episode,

a tool that builds alignment matrices and phylogenetic trees from raw

sequencing reads.

By leveraging the database of orthologous genes called OMA, Read2Tree bypasses traditional, time-consuming steps such as genome assembly, annotation and all-versus-all sequence comparisons.

Links:

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree

(David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J. Sedlazeck, Christophe Dessimoz)

Background story Read2Tree on GitHub OMA browser The Guardian’s podcast about Victoria Amelina and Volodymyr Vakulenko

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